PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N3W47
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 257aa    MW: 28158.5 Da    PI: 9.3699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N3W47genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08158198954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Aradu.N3W47 158 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 198
                  699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-13150212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-14153208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6159198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-5172203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDNTIDQLKS SSSSEEDQMD LMNMMMMQLP NEFSSPNYAD ETSVQGFHPS PQLLGARSSS  60
TMQLSDSIDN RNSIMPWSSP STTISFSNNN TTSMLQTELP SLLGNSGATE NKRNSMAAMR  120
EMIFRIAAMQ PIHIDPESVK PPKRRNVKIS KDPQSVAARH RRERISERIR ILQRLVPGGT  180
KMDTASMLDE AIHYVKFLKA QIHSLERASS SASNNNNNNA TASGAGAATA TANAPGASYL  240
SLPKPYQGRN AHHYGDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3369551e-94DQ336955.1 Glycine max cultivar Williams 82 clone BAC gmw1-52d3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015934179.10.0PREDICTED: transcription factor HEC2-like
SwissprotQ9SND48e-49HEC2_ARATH; Transcription factor HEC2
TrEMBLG7J6E72e-78G7J6E7_MEDTR; Transcription factor
STRINGGLYMA04G04190.21e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-41bHLH family protein